| Spiro, Thomas G.; Spiro, Helen H.; Soldatova, Alexandra. 2025. Earth Wise: A Guide to Today's Environmental Issues. McFarland. 978-1476698083. |
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Chemistry Education, Clean Energy |
| Turecek, F. Phys. Chem. Chem. Phys. 2023, 25, 32292-32304.
Zhu, H.; Nytka, M.; Vu, T. N. K.; Lemr, K. Turecek, F. J. Am. Soc. Mass Spectrom. 2024, 35, 3070-3088.
Vlk, M.; Wan, J.; Nytka, M.; Vu, T. N. K.; Lemr, K.; Tureček, F. J. Am. Soc. Mass Spectrom. 2025, 36, 175-186.
Wan, J.; Vlk, M.; Wei, C.; Turecek, F. J. Am. Soc. Mass Spectrom. 2025, 36, in press.
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Chemical Biology, Organic Chemistry, Physical Chemistry, Theory and Computation |
Cryo-EM Structure of the Mnx Protein Complex Reveals a Tunnel Framework for the Mechanism of Manganese Biomineralization
Irina V. Novikova, Alexandra V. Soldatova, Trevor H. Moser, Stephanie M. Thibert, Christine A. Romano, Mowei Zhou, Bradley M. Tebo, James E. Evans, and Thomas G. Spiro
Journal of the American Chemical Society 2024 146 (33), 22950-22958
DOI: 10.1021/jacs.3c06537 |
Publications, Articles |
Inorganic Chemistry |
| Ido Levin, Naroa Sadaba, Alshakim Nelson, and Sarah L. Keller, 2024, Asymmetric flow in helical pipes inspired by shark intestines, Proc. Nat. Acad. Sci., 121, e2406481121. |
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Biophysics, Materials, Physical Chemistry |
| Simon, J. J.; ^Fowler, D. M.; ^Maly, D. J. “Multiplexed profiling of intracellular protein abundance, activity, interactions and druggability with LABEL-seq” Nat. Meth. (2024), 21, 2094-2106. |
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Chemical Biology |
| Zhang, J. Z.; Ong, S. E.; Baker, D.; Maly D. J. “Single-cell sensor analyses reveal signaling programs enabling Ras-G12C drug resistance” Nat. Chem. Biol. (2024), in press. |
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Chemical Biology |
| ^Zhang, J. Z.; Nguyen, W.H.; Greenwood, N.; Rose, J. C.; Ong, S-E.; ^Maly, D. J.; ^Baker, D. “Computationally designed sensors detect Ras activity and signaling effectors at subcellular resolution” Nat. Biotech. (2024), in press. |
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Chemical Biology |
| Chakraborty, S.; Ahler, E.; Simon, J. J.; Fang, L.; Potter, Z. E.; Sitko, K. A.; Stephany, J. J.; Guttman, M.; ^Fowler, D. M.; ^Maly, D. J. “Profiling of drug resistance in Src kinase at scale uncovers a regulatory network coupling autoinhibition and catalytic domain dynamics.” Cell Chem. Biol. (2024), 31, 207-22. |
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Chemical Biology |
| Lundahl, M. N.; Greiner, M. B.; Downing, A. N.; Piquette, M. C.; *Kovacs, J. A. “Exploring the Influence of H-Bonding and Ligand Constraints on Thiolate Ligated Non-Heme Iron Mediated Dioxygen Activation.” Chem. Sci. 2024, 15, 12710-12720 |
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Catalysis, Chemical Biology, Inorganic Chemistry |
| Wei, C. T.; Popp, N. A.; Peleg, O.; Powell, R. L.; Borenstein, E.; ^Maly, D. J.; ^Fowler, D. M. “A chemically-controlled Cas9 switch enables temporal modulation of diverse effectors” Nat. Chem. Biol. (2023), 19, 981-989. |
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Chemical Biology |
| Chem. Commun., 2023,59, 4063-4066 |
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Chemical Biology, Organic Chemistry |
| Lau, Jascha A., Martin DeWitt, Mark A. Boyer, Mark C. Babin, Tonia Solomis, Max Grellmann, Knut R. Asmis, Anne B. McCoy, and Daniel M. Neumark. "High-Resolution Photoelectron Spectroscopy of Vibrationally Excited Vinoxide Anions." J. Phys. Chem. A, 127,3133-3147 (2023). |
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Physical Chemistry, Theory and Computation |
| Ryan J. DiRisio, Jacob M. Finney and Anne B. McCoy, “Diffusion Monte Carlo approaches for studying nuclear quantum effects in fluxional molecules,” WIRES Computational Molecular Science, 12, e1615 (2022). |
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Physical Chemistry, Theory and Computation |
| Mark A. Boyer and Anne B. McCoy, “A Wave Function Correction-Based Approach to the Identification of Resonances for Vibrational Perturbation Theory,” J. Chem. Phys. 157 164113 (2022). |
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Physical Chemistry, Theory and Computation |
| Halpern, A.R.; Lee, M.Y.; Howard, M.D.; Woodworth, M.A.; Nicovich, P.R.; Vaughan, J.C. Versatile, do-it-yourself, low-cost spinning disk confocal microscope. Biomed. Opt. Express 2022, 13, 1102–1120. |
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Analytical Chemistry, Biophysics |
| Dedushko, M. A.; Greiner, M. B.; Downing, A. N.; Coggins, M. K.; *Kovacs, J. A. “Electronic Structure and Reactivity of Dioxygen-Derived Aliphatic Thiolate-Ligated Fe-Peroxo and Fe(IV) Oxo Compounds.” J. Am. Chem. Soc. 2022,144, 8515-8528 |
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Catalysis, Chemical Biology, Inorganic Chemistry |
| Ryan J. DiRisio, Fenris Lu and Anne B. McCoy, “GPU-Accelerated Neural Network Potential Energy Surfaces for Diffusion Monte Carlo,” J. Phys. Chem. A, 125, 5849-5859 (2021). |
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Physical Chemistry, Theory and Computation |
| Woodworth, M.W.; Ng, K.K.H.; Halpern, A.R.; Pease, N.A.; Nguyen, P.H.B.; #Kueh, H.Y.; #Vaughan, J.C. Multiplexed single-cell profiling of chromatin states at genomic loci by expansion microscopy. Nucleic Acids Res. 2021, e82. |
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Analytical Chemistry, Biophysics, Chemical Biology |
| Toledo, S.; Poon, P. C. Y.; Gleaves, M.; Rees, J. A.; Kaminsky, W.; *Kovacs, J. A. “Increasing Reactivity by Incorporating pi-Acceptor Ligands into Coordinatively Unsaturated Thiolate-Ligated Iron(II) Complexes” Inorg. Chim. Acta. 2021, 524, 12042. |
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Inorganic Chemistry |
| Dedushko, M.; Pikul, J.; *Kovacs, J. A. “Superoxide Oxidation by a Thiolate-Ligated Iron Complex and Anion Inhibition” Inorg. Chem. 2021, 60, 7250-7261 |
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Inorganic Chemistry |
| Downing, A. N.; Poon, P. C. Y.; Coggins, M. K.; *Kovacs, J. A. “Influence of Thiolate versus Alkoxide Ligands on the Stability of Crystallographically Characterized Mn(III)-Alkylperoxo Complexes.” J. Am. Chem. Soc. 2021, 143, 6104-6113. (featured in JACS Select) |
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Chemical Biology, Inorganic Chemistry |
| Leonen, C.J.A..; Shimada, M.; Weller, C.E.; Nakadai, T.; Hsu, P.L.; Tyson, E.L.; Mishra, A.; Shelton, P.M.M.; Sadilek, M.; Hawkins, R.D.; Zheng, N.; Roeder, R.G.; Chatterjee, C. Sumoylation of the human histone H4 tail inhibits p300-mediated transcription by RNA polymerase II in cellular extracts. Elife 2021, 10:e67952. |
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Chemical Biology, Organic Chemistry |
| "Photochemistry of carbon nitrides and heptazine derivatives." Hwang, D.; Schlenker, C. W., Chem. Commun., 2021, 57, 9330. |
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Physical Chemistry |
| Feldman, H. C.; Ghosh, R.; Auyeung, V.; Mueller, J. L.; Kim, J.; Potter, Z. E.; Perera, B. G. K.; Vidadala, V. N.; Olivier, A.; Backes, B. J.; Zikherman, J.; ^Papa, F. R.; ^Maly, D. J. “ATP-Competitive Partial Antagonists of the IRE1α RNase Segregate Outputs of the UPR” Nat. Chem. Biol. (2021), 17, 1148–56. |
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Chemical Biology |
| Ludwig, J.; Maibaum, L. Effect of alcohol on the phase separation in model membranes. Chemistry and Physics of Lipids 2020, 233, 104986 |
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Biophysics, Theory and Computation |
