Publications

Author/Title Research Type Related Fields
Ido Levin, Naroa Sadaba, Alshakim Nelson, and Sarah L. Keller, 2024, Asymmetric flow in helical pipes inspired by shark intestines, Proc. Nat. Acad. Sci., 121, e2406481121. Publications, Articles Biophysics, Materials, Physical Chemistry
Simon, J. J.; ^Fowler, D. M.; ^Maly, D. J. “Multiplexed profiling of intracellular protein abundance, activity, interactions and druggability with LABEL-seq” Nat. Meth. (2024), 21, 2094-2106. Publications, Articles Chemical Biology
Zhang, J. Z.; Ong, S. E.; Baker, D.; Maly D. J. “Single-cell sensor analyses reveal signaling programs enabling Ras-G12C drug resistance” Nat. Chem. Biol. (2024), in press. Publications, Articles Chemical Biology
^Zhang, J. Z.; Nguyen, W.H.; Greenwood, N.; Rose, J. C.; Ong, S-E.; ^Maly, D. J.; ^Baker, D. “Computationally designed sensors detect Ras activity and signaling effectors at subcellular resolution” Nat. Biotech. (2024), in press. Publications, Articles Chemical Biology
Chakraborty, S.; Ahler, E.; Simon, J. J.; Fang, L.; Potter, Z. E.; Sitko, K. A.; Stephany, J. J.; Guttman, M.; ^Fowler, D. M.; ^Maly, D. J. “Profiling of drug resistance in Src kinase at scale uncovers a regulatory network coupling autoinhibition and catalytic domain dynamics.” Cell Chem. Biol. (2024), 31, 207-22. Publications, Articles Chemical Biology
Lundahl, M. N.; Greiner, M. B.; Downing, A. N.; Piquette, M. C.; *Kovacs, J. A. “Exploring the Influence of H-Bonding and Ligand Constraints on Thiolate Ligated Non-Heme Iron Mediated Dioxygen Activation.” Chem. Sci. 2024, 15, 12710-12720 Publications, Articles Catalysis, Chemical Biology, Inorganic Chemistry
Wei, C. T.; Popp, N. A.; Peleg, O.; Powell, R. L.; Borenstein, E.; ^Maly, D. J.; ^Fowler, D. M. “A chemically-controlled Cas9 switch enables temporal modulation of diverse effectors” Nat. Chem. Biol. (2023), 19, 981-989. Publications, Articles Chemical Biology
Chem. Commun., 2023,59, 4063-4066 Publications, Articles Chemical Biology, Organic Chemistry
Lau, Jascha A., Martin DeWitt, Mark A. Boyer, Mark C. Babin, Tonia Solomis, Max Grellmann, Knut R. Asmis, Anne B. McCoy, and Daniel M. Neumark. "High-Resolution Photoelectron Spectroscopy of Vibrationally Excited Vinoxide Anions." J. Phys. Chem. A, 127,3133-3147 (2023). Publications Physical Chemistry, Theory and Computation
Ryan J. DiRisio, Jacob M. Finney and Anne B. McCoy, “Diffusion Monte Carlo approaches for studying nuclear quantum effects in fluxional molecules,” WIRES Computational Molecular Science, 12, e1615 (2022). Publications Physical Chemistry, Theory and Computation
Mark A. Boyer and Anne B. McCoy, “A Wave Function Correction-Based Approach to the Identification of Resonances for Vibrational Perturbation Theory,” J. Chem. Phys. 157 164113 (2022). Publications Physical Chemistry, Theory and Computation
Halpern, A.R.; Lee, M.Y.; Howard, M.D.; Woodworth, M.A.; Nicovich, P.R.; Vaughan, J.C. Versatile, do-it-yourself, low-cost spinning disk confocal microscope. Biomed. Opt. Express 2022, 13, 1102–1120. Publications, Articles Analytical Chemistry, Biophysics
Dedushko, M. A.; Greiner, M. B.; Downing, A. N.; Coggins, M. K.; *Kovacs, J. A. “Electronic Structure and Reactivity of Dioxygen-Derived Aliphatic Thiolate-Ligated Fe-Peroxo and Fe(IV) Oxo Compounds.” J. Am. Chem. Soc. 2022,144, 8515-8528 Publications, Articles Catalysis, Chemical Biology, Inorganic Chemistry
Ryan J. DiRisio, Fenris Lu and Anne B. McCoy, “GPU-Accelerated Neural Network Potential Energy Surfaces for Diffusion Monte Carlo,” J. Phys. Chem. A, 125, 5849-5859 (2021). Publications Physical Chemistry, Theory and Computation
Woodworth, M.W.; Ng, K.K.H.; Halpern, A.R.; Pease, N.A.; Nguyen, P.H.B.; #Kueh, H.Y.; #Vaughan, J.C. Multiplexed single-cell profiling of chromatin states at genomic loci by expansion microscopy. Nucleic Acids Res. 2021, e82. Publications, Articles Analytical Chemistry, Biophysics, Chemical Biology
Toledo, S.; Poon, P. C. Y.; Gleaves, M.; Rees, J. A.; Kaminsky, W.; *Kovacs, J. A. “Increasing Reactivity by Incorporating pi-Acceptor Ligands into Coordinatively Unsaturated Thiolate-Ligated Iron(II) Complexes” Inorg. Chim. Acta. 2021, 524, 12042. Publications, Articles Inorganic Chemistry
Dedushko, M.; Pikul, J.; *Kovacs, J. A. “Superoxide Oxidation by a Thiolate-Ligated Iron Complex and Anion Inhibition” Inorg. Chem. 2021, 60, 7250-7261 Publications, Articles Inorganic Chemistry
Downing, A. N.; Poon, P. C. Y.; Coggins, M. K.; *Kovacs, J. A. “Influence of Thiolate versus Alkoxide Ligands on the Stability of Crystallographically Characterized Mn(III)-Alkylperoxo Complexes.” J. Am. Chem. Soc. 2021, 143, 6104-6113.  (featured in JACS Select)  Publications, Articles Chemical Biology, Inorganic Chemistry
Teng-Wei Wang, Pin-Ruei Huang, Jayme L. Chow, Werner Kaminsky, and Matthew R. Golder* J. Am. Chem. Soc. 2021, 143, 7314. Publications, Articles Catalysis, Materials, Organic Chemistry
Leonen, C.J.A..; Shimada, M.; Weller, C.E.; Nakadai, T.; Hsu, P.L.; Tyson, E.L.; Mishra, A.; Shelton, P.M.M.; Sadilek, M.; Hawkins, R.D.; Zheng, N.; Roeder, R.G.; Chatterjee, C. Sumoylation of the human histone H4 tail inhibits p300-mediated transcription by RNA polymerase II in cellular extracts. Elife 2021, 10:e67952. Publications, Articles Chemical Biology, Organic Chemistry
"Photochemistry of carbon nitrides and heptazine derivatives." Hwang, D.; Schlenker, C. W., Chem. Commun., 2021, 57, 9330. Publications Physical Chemistry
Feldman, H. C.; Ghosh, R.; Auyeung, V.; Mueller, J. L.; Kim, J.; Potter, Z. E.; Perera, B. G. K.; Vidadala, V. N.; Olivier, A.; Backes, B. J.; Zikherman, J.; ^Papa, F. R.; ^Maly, D. J. “ATP-Competitive Partial Antagonists of the IRE1α RNase Segregate Outputs of the UPR” Nat. Chem. Biol. (2021), 17, 1148–56. Publications, Articles Chemical Biology
Huang, S. R.; Tureček, F.: Cation Radicals of Hachimoji Nucleobases P and Z.  Generation in the Gas Phase and Characterization by UV-Vis Photodissociation Action Spectroscopy and Theory. J. Am. Soc. Mass Spectrom. 2021, 32, 373-386, DOI: 10.1021/jasms.0c00381 Publications, Articles, Books, Reviews Analytical Chemistry, Chemical Biology, Organic Chemistry, Physical Chemistry, Theory and Computation
Ludwig, J.; Maibaum, L. Effect of alcohol on the phase separation in model membranes. Chemistry and Physics of Lipids 2020, 233, 104986 Publications, Articles Biophysics, Theory and Computation
Luo, Y.; Maibaum, L. Modulated and spiral surface patterns on deformable lipid vesicles. J. Chem. Phys. 2020, 153, 144901 Publications, Articles Biophysics, Physical Chemistry, Theory and Computation